PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73140
Common NameSELMODRAFT_73140, SELMODRAFT_73145
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 61aa    MW: 7027.99 Da    PI: 11.236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73140genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19454155
    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
           +++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae+Aa+a+++a+  l+g
  73140  4 KKFVGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFNTAEDAARAYDEAACLLRG 54
           589*******.7*********32...35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.28E-28461No hitNo description
Gene3DG3DSA:3.30.730.107.4E-29561IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-20561IPR016177DNA-binding domain
PROSITE profilePS5103219.585561IPR001471AP2/ERF domain
PfamPF008476.0E-14554IPR001471AP2/ERF domain
SMARTSM003805.7E-31561IPR001471AP2/ERF domain
PRINTSPR003673.2E-8617IPR001471AP2/ERF domain
PRINTSPR003673.2E-82844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
KNRKKFVGVR QRPSGRWVAE IKDTTQKIRL WLGTFNTAED AARAYDEAAC LLRGTNTRTN  60
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-15461159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A2e-15461462ATERF1
2gcc_A2e-15461462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002977417.11e-38hypothetical protein SELMODRAFT_73145, partial
RefseqXP_002975002.11e-38hypothetical protein SELMODRAFT_73140, partial
SwissprotQ6J9S11e-35RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLD8RVK11e-38D8RVK1_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ214214e-38(Selaginella moellendorffii)
STRINGEFJ237874e-38(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-27related to AP2 11
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]